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b4galt5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 [ Perca flavescens (yellow perch) ]

Gene ID: 114559421, updated on 15-Mar-2024

Summary

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Gene symbol
b4galt5
Gene description
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5
Locus tag
EPR50_G00075330
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See b4galt5 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 7 NC_041337.1 (16145339..16170812, complement)

Chromosome 7 - NC_041337.1Genomic Context describing neighboring genes Neighboring gene AAR2 splicing factor Neighboring gene elastin microfibril interfacer 3 Neighboring gene solute carrier family 9 member 8 Neighboring gene opsin 7, group member b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041337.1 Chromosome 7 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoprotein biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041337.1 Reference PFLA_1.0 Primary Assembly

    Range
    16145339..16170812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028584039.1 → XP_028439840.1  beta-1,4-galactosyltransferase 5-like

    UniProtKB/TrEMBL
    A0A484D5D3
    Conserved Domains (1) summary
    cd00899
    Location:154 → 369
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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