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chst1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [ Perca flavescens (yellow perch) ]

Gene ID: 114558994, updated on 15-Mar-2024

Summary

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Gene symbol
chst1
Gene description
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
Locus tag
EPR50_G00001630
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See chst1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (11840140..11844306, complement)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene B2 bradykinin receptor-like Neighboring gene SPG21 abhydrolase domain containing, maspardin Neighboring gene uncharacterized LOC114557304 Neighboring gene solute carrier family 35 member C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    11840140..11844306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028583375.1 → XP_028439176.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A484DQP2
    Conserved Domains (1) summary
    cl21551
    Location:214 → 401
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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