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LOC114557924 transducin-like enhancer protein 3-B [ Perca flavescens (yellow perch) ]

Gene ID: 114557924, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114557924
Gene description
transducin-like enhancer protein 3-B
Locus tag
EPR50_G00002210
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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Genomic context

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See LOC114557924 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (15257326..15287985, complement)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF23 Neighboring gene uncharacterized LOC114557966 Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats b Neighboring gene mortality factor 4-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transducin-like enhancer protein 3-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    15257326..15287985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028581697.1 → XP_028437498.1  transducin-like enhancer protein 3-B isoform X7

    Conserved Domains (5) summary
    cd00200
    Location:475 → 760
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:480 → 519
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 133
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:179 → 364
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam11593
    Location:281 → 399
    Med3; Mediator complex subunit 3 fungal

  2. XM_028581680.1 → XP_028437481.1  transducin-like enhancer protein 3-B isoform X5

    Conserved Domains (5) summary
    cd00200
    Location:489 → 774
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:494 → 533
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 133
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:206 → 378
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam11593
    Location:295 → 413
    Med3; Mediator complex subunit 3 fungal

  3. XM_028581659.1 → XP_028437460.1  transducin-like enhancer protein 3-B isoform X2

    Conserved Domains (5) summary
    cd00200
    Location:502 → 787
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:507 → 546
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 146
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:219 → 391
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam11593
    Location:308 → 426
    Med3; Mediator complex subunit 3 fungal

  4. XM_028581690.1 → XP_028437491.1  transducin-like enhancer protein 3-B isoform X6

    Conserved Domains (4) summary
    cd00200
    Location:485 → 770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:490 → 529
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 143
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:189 → 374
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

  5. XM_028581667.1 → XP_028437468.1  transducin-like enhancer protein 3-B isoform X3

    Conserved Domains (5) summary
    cd00200
    Location:499 → 784
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:504 → 543
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 143
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:216 → 388
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam11593
    Location:305 → 423
    Med3; Mediator complex subunit 3 fungal

  6. XM_028581676.1 → XP_028437477.1  transducin-like enhancer protein 3-B isoform X4

    UniProtKB/TrEMBL
    A0A484DN15
    Conserved Domains (5) summary
    cd00200
    Location:498 → 783
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:503 → 542
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 156
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:202 → 387
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam09770
    Location:135 → 187
    PAT1; Topoisomerase II-associated protein PAT1

  7. XM_028581654.1 → XP_028437455.1  transducin-like enhancer protein 3-B isoform X1

    Conserved Domains (6) summary
    cd00200
    Location:512 → 797
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:517 → 556
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:1 → 156
    TLE_N; Groucho/TLE N-terminal Q-rich domain
    pfam05793
    Location:229 → 401
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    pfam09770
    Location:135 → 187
    PAT1; Topoisomerase II-associated protein PAT1
    pfam11593
    Location:318 → 436
    Med3; Mediator complex subunit 3 fungal
Nucleotide Protein
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