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galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Perca flavescens (yellow perch) ]

Gene ID: 114556189, updated on 15-Mar-2024

Summary

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Gene symbol
galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
Locus tag
EPR50_G00046040
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See galnt9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 5 NC_041335.1 (1995428..2123351, complement)

Chromosome 5 - NC_041335.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114555928 Neighboring gene ribosomal protein L35 Neighboring gene fibrosin-1-like protein Neighboring gene autism susceptibility gene 2 protein-like Neighboring gene checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041335.1 Chromosome 5 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041335.1 Reference PFLA_1.0 Primary Assembly

    Range
    1995428..2123351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028579074.1 → XP_028434875.1  polypeptide N-acetylgalactosaminyltransferase 9

    UniProtKB/TrEMBL
    A0A484DA62
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:467 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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