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b3galt8 beta-1,3-galactosyltransferase 8 [ Perca flavescens (yellow perch) ]

Gene ID: 114556030, updated on 15-Mar-2024

Summary

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Gene symbol
b3galt8
Gene description
beta-1,3-galactosyltransferase 8
Locus tag
EPR50_G00045550
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Also known as
si:ch73-195i19.3
Orthologs
zebrafish all
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Genomic context

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See b3galt8 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 5 NC_041335.1 (253295..255110, complement)

Chromosome 5 - NC_041335.1Genomic Context describing neighboring genes Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor b Neighboring gene dual specificity testis-specific protein kinase 1-like Neighboring gene tenascin Cb Neighboring gene uncharacterized LOC114555730 Neighboring gene Tnf receptor-associated factor 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041335.1 Chromosome 5 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041335.1 Reference PFLA_1.0 Primary Assembly

    Range
    253295..255110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028578854.1 → XP_028434655.1  beta-1,3-galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A484DA40
    Conserved Domains (1) summary
    cl21608
    Location:81 → 266
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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