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LOC114555595 transducin-like enhancer protein 4 [ Perca flavescens (yellow perch) ]

Gene ID: 114555595, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114555595
Gene description
transducin-like enhancer protein 4
Locus tag
EPR50_G00053370
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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Genomic context

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See LOC114555595 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 5 NC_041335.1 (25879308..25920401)

Chromosome 5 - NC_041335.1Genomic Context describing neighboring genes Neighboring gene KISS1 receptor b Neighboring gene phosphoserine aminotransferase 1 Neighboring gene methylcrotonyl-CoA carboxylase subunit 2 Neighboring gene transmembrane protein 8B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041335.1 Chromosome 5 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transducin-like enhancer protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041335.1 Reference PFLA_1.0 Primary Assembly

    Range
    25879308..25920401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028578106.1 → XP_028433907.1  transducin-like enhancer protein 4

    UniProtKB/TrEMBL
    A0A484DC72
    Conserved Domains (3) summary
    cd00200
    Location:481 → 766
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:486 → 525
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:8 → 135
    TLE_N; Groucho/TLE N-terminal Q-rich domain
Nucleotide Protein
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