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prickle2b prickle homolog 2b [ Perca flavescens (yellow perch) ]

Gene ID: 114554907, updated on 15-Mar-2024

Summary

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Gene symbol
prickle2b
Gene description
prickle homolog 2b
Locus tag
EPR50_G00042960
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Also known as
prickle2
Orthologs
human zebrafish all
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Genomic context

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See prickle2b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 4 NC_041334.1 (32189458..32282622, complement)

Chromosome 4 - NC_041334.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 6 Neighboring gene solute carrier family 2 member 9, like 1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 9 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041334.1 Chromosome 4 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prickle-like protein 2
Names
prickle planar cell polarity protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041334.1 Reference PFLA_1.0 Primary Assembly

    Range
    32189458..32282622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028576980.1 → XP_028432781.1  prickle-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A484DHX9
    Conserved Domains (4) summary
    cd09415
    Location:186 → 244
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:249 → 304
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:309 → 367
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:82 → 178
    PET_Prickle; The PET domain of Prickle

  2. XM_028576981.1 → XP_028432782.1  prickle-like protein 2 isoform X2

    Conserved Domains (4) summary
    cd09415
    Location:126 → 184
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:189 → 244
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:249 → 307
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:22 → 118
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein
Heading Accession and Version

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