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chsy1 chondroitin sulfate synthase 1 [ Perca flavescens (yellow perch) ]

Gene ID: 114554191, updated on 15-Mar-2024

Summary

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Gene symbol
chsy1
Gene description
chondroitin sulfate synthase 1
Locus tag
EPR50_G00001420
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See chsy1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (9139171..9218997, complement)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member A3 Neighboring gene leucine-rich repeat kinase 1 Neighboring gene selenoprotein S Neighboring gene small nuclear ribonucleoprotein polypeptide A'

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    9139171..9218997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028575860.1 → XP_028431661.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:235 → 774
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:84 → 305
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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