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ruvbl1 RuvB-like AAA ATPase 1 [ Perca flavescens (yellow perch) ]

Gene ID: 114553967, updated on 15-Mar-2024

Summary

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Gene symbol
ruvbl1
Gene description
RuvB-like AAA ATPase 1
Locus tag
EPR50_G00040230
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See ruvbl1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 4 NC_041334.1 (26106938..26113172)

Chromosome 4 - NC_041334.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 2b Neighboring gene eukaryotic elongation factor, selenocysteine-tRNA-specific Neighboring gene musculoskeletal, embryonic nuclear protein 1a Neighboring gene RFT1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041334.1 Chromosome 4 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in box C/D snoRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of NuA4 histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of R2TP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Swr1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ruvB-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041334.1 Reference PFLA_1.0 Primary Assembly

    Range
    26106938..26113172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028575449.1 → XP_028431250.1  ruvB-like 1

    UniProtKB/TrEMBL
    A0A484DFD7
    Conserved Domains (1) summary
    COG1224
    Location:2 → 455
    TIP49; DNA helicase TIP49, TBP-interacting protein [Transcription]
Nucleotide Protein
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