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ext2 exostosin glycosyltransferase 2 [ Perca flavescens (yellow perch) ]

Gene ID: 114553112, updated on 15-Mar-2024

Summary

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Gene symbol
ext2
Gene description
exostosin glycosyltransferase 2
Locus tag
EPR50_G00004070
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See ext2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (22386129..22407368)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114564008 Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene diacylglycerol lipase, alpha Neighboring gene ALX homeobox 4a Neighboring gene uncharacterized LOC114559714

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    22386129..22407368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028574261.1 → XP_028430062.1  exostosin-2

    UniProtKB/TrEMBL
    A0A484DQJ7
    Conserved Domains (2) summary
    pfam03016
    Location:100 → 381
    Exostosin; Exostosin family
    pfam09258
    Location:457 → 698
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Gene LinkOut

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