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galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [ Perca flavescens (yellow perch) ]

Gene ID: 114552567, updated on 12-Sep-2024

Summary

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Gene symbol
galnt17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
Locus tag
EPR50_G00030130
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See galnt17 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 3 NC_041333.1 (33178219..33197931, complement)

Chromosome 3 - NC_041333.1Genomic Context describing neighboring genes Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene calneuron 1 Neighboring gene rhomboid domain containing 1 Neighboring gene EMAP like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041333.1 Chromosome 3 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041333.1 Reference PFLA_1.0 Primary Assembly

    Range
    33178219..33197931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028573465.1 → XP_028429266.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X1

    UniProtKB/TrEMBL
    A0A484DIM1
    Conserved Domains (2) summary
    cd02510
    Location:156 → 455
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:468 → 591
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_028573466.1 → XP_028429267.1  polypeptide N-acetylgalactosaminyltransferase 17 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:156 → 455
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:468 → 567
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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