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pigb phosphatidylinositol glycan anchor biosynthesis, class B [ Perca flavescens (yellow perch) ]

Gene ID: 114552476, updated on 15-Mar-2024

Summary

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Gene symbol
pigb
Gene description
phosphatidylinositol glycan anchor biosynthesis, class B
Locus tag
EPR50_G00004870
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See pigb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (25702347..25708535, complement)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene NEDD4 E3 ubiquitin protein ligase a Neighboring gene protogenin Neighboring gene cell cycle progression 1 Neighboring gene PIGB opposite strand 1 Neighboring gene RAB27A, member RAS oncogene family Neighboring gene rho family-interacting cell polarization regulator 1-like Neighboring gene VRK serine/threonine kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    25702347..25708535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028573326.1 → XP_028429127.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A484DPE2
    Conserved Domains (1) summary
    cl21590
    Location:43 → 522
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_028573335.1 → XP_028429136.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A484DPE2
    Conserved Domains (1) summary
    cl21590
    Location:43 → 522
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  3. XM_028573317.1 → XP_028429118.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A484DPE2
    Conserved Domains (1) summary
    cl21590
    Location:43 → 522
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  4. XM_028573308.1 → XP_028429109.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A484DPE2
    Conserved Domains (1) summary
    cl21590
    Location:43 → 522
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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