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lgr5 leucine rich repeat containing G protein-coupled receptor 5 [ Perca flavescens (yellow perch) ]

Gene ID: 114550480, updated on 21-Dec-2023

Summary

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Gene symbol
lgr5
Gene description
leucine rich repeat containing G protein-coupled receptor 5
Locus tag
EPR50_G00228960
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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Genomic context

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See lgr5 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
21
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 23 NC_041353.1 (2925956..2986532, complement)

Chromosome 23 - NC_041353.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 9b Neighboring gene myelin regulatory factor like Neighboring gene RAB21, member RAS oncogene family Neighboring gene chaperonin containing TCP1, subunit 2 (beta)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041353.1 Chromosome 23 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing G-protein coupled receptor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041353.1 Reference PFLA_1.0 Primary Assembly

    Range
    2925956..2986532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028571277.1 → XP_028427078.1  leucine-rich repeat-containing G-protein coupled receptor 5

    Conserved Domains (4) summary
    PLN00113
    Location:84 → 477
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:93 → 116
    LRR_RI; leucine-rich repeat [structural motif]
    cd14964
    Location:581 → 605
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:579 → 858
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
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