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LOC114509102 core histone macro-H2A.1 [ Phyllostomus discolor (pale spear-nosed bat) ]

Gene ID: 114509102, updated on 30-Mar-2024

Summary

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Gene symbol
LOC114509102
Gene description
core histone macro-H2A.1
See related
EnsemblRapid:ENSPDIG00005023260
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See LOC114509102 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
101 current mPhyDis1.pri.v3 (GCF_004126475.2) 13 NC_040915.2 (9019932..9095126, complement)
100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 13 NC_040915.1 (66429260..66503927)

Chromosome 13 - NC_040915.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118497935 Neighboring gene uncharacterized LOC118497868 Neighboring gene uncharacterized LOC118497870 Neighboring gene uncharacterized LOC118497869 Neighboring gene TIFA inhibitor Neighboring gene neurogenin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
core histone macro-H2A.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhyDis1.pri.v3

Genomic

  1. NC_040915.2 Reference mPhyDis1.pri.v3

    Range
    9019932..9095126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036013863.1 → XP_035869756.1  core histone macro-H2A.1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2MYV2
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:178 → 368
    Macro_H2A-like; macrodomain, macroH2A-like family

  2. XM_028527177.2 → XP_028382978.1  core histone macro-H2A.1 isoform X4

    UniProtKB/TrEMBL
    A0A6J2MYE0
    Related
    ENSPDIP00005032799.2, ENSPDIT00005037996.2
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:177 → 364
    Macro_H2A-like; macrodomain, macroH2A-like family

  3. XM_028527176.2 → XP_028382977.1  core histone macro-H2A.1 isoform X3

    UniProtKB/TrEMBL
    A0A6J2MS55
    Related
    ENSPDIP00005036410.1, ENSPDIT00005045456.1
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:178 → 365
    Macro_H2A-like; macrodomain, macroH2A-like family

  4. XM_028527175.2 → XP_028382976.1  core histone macro-H2A.1 isoform X2

    UniProtKB/TrEMBL
    A0A6J2MTU6
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:177 → 367
    Macro_H2A-like; macrodomain, macroH2A-like family

  5. XM_028527174.2 → XP_028382975.1  core histone macro-H2A.1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2MYV2
    Related
    ENSPDIP00005032817.2, ENSPDIT00005038016.2
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:178 → 368
    Macro_H2A-like; macrodomain, macroH2A-like family

  6. XM_036013864.1 → XP_035869757.1  core histone macro-H2A.1 isoform X6

    UniProtKB/TrEMBL
    A0A7E6CSB0
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cl00019
    Location:178 → 198
    Macro_SF; macrodomain superfamily

  7. XM_028527178.2 → XP_028382979.1  core histone macro-H2A.1 isoform X5

    UniProtKB/TrEMBL
    A0A6J2MTV0
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cl00019
    Location:178 → 225
    Macro; Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ...

  8. XM_028527180.2 → XP_028382981.1  core histone macro-H2A.1 isoform X7

    UniProtKB/TrEMBL
    A0A6J2MTU9
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cl00019
    Location:178 → 196
    Macro; Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ...

  9. XM_036013865.1 → XP_035869758.1  core histone macro-H2A.1 isoform X8

    UniProtKB/TrEMBL
    A0A7E6CRY1, A0A834DKP1
    Conserved Domains (2) summary
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cl00019
    Location:177 → 195
    Macro_SF; macrodomain superfamily
Nucleotide Protein
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