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SGCA sarcoglycan alpha [ Phyllostomus discolor (pale spear-nosed bat) ]

Gene ID: 114503161, updated on 30-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSPDIG00005015122
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
101 current mPhyDis1.pri.v3 (GCF_004126475.2) 8 NC_040910.2 (101495162..101505425, complement)
100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 8 NC_040910.1 (83442117..83451765, complement)

Chromosome 8 - NC_040910.2Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 25-like Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC118502209 Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhyDis1.pri.v3

Genomic

  1. NC_040910.2 Reference mPhyDis1.pri.v3

    Range
    101495162..101505425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036033769.1 → XP_035889662.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A6J2ME51
    Related
    ENSPDIP00005021655.1, ENSPDIT00005024963.2
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 354
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_028520592.2 → XP_028376393.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A6J2ME51
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 354
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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