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DPF2 double PHD fingers 2 [ Phyllostomus discolor (pale spear-nosed bat) ]

Gene ID: 114499403, updated on 30-Mar-2024

Summary

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Gene symbol
DPF2
Gene description
double PHD fingers 2
See related
EnsemblRapid:ENSPDIG00005005127
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See DPF2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
101 current mPhyDis1.pri.v3 (GCF_004126475.2) 6 NC_040908.2 (165648717..165662088)
100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 6 NC_040908.1 (165113105..165126483)

Chromosome 6 - NC_040908.2Genomic Context describing neighboring genes Neighboring gene DNA polymerase alpha 2, accessory subunit Neighboring gene CDC42 effector protein 2 Neighboring gene tigger transposable element derived 3 Neighboring gene solute carrier family 25 member 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ubi-d4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhyDis1.pri.v3

Genomic

  1. NC_040908.2 Reference mPhyDis1.pri.v3

    Range
    165648717..165662088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028515561.2 → XP_028371362.1  zinc finger protein ubi-d4 isoform X2

    UniProtKB/TrEMBL
    A0A6J2LUE4, A0A834E0C9
    Related
    ENSPDIP00005007259.1, ENSPDIT00005008477.2
    Conserved Domains (4) summary
    COG5189
    Location:201 → 233
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:329 → 374
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:272 → 327
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 75
    Requiem_N; N-terminal domain of DPF2/REQ

  2. XM_028515558.2 → XP_028371359.1  zinc finger protein ubi-d4 isoform X1

    UniProtKB/TrEMBL
    A0A6J2LWH1, A0A833ZZX3
    Conserved Domains (4) summary
    COG5189
    Location:201 → 247
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:343 → 388
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:286 → 341
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 75
    Requiem_N; N-terminal domain of DPF2/REQ
Nucleotide Protein
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