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ARID1A AT-rich interaction domain 1A [ Phyllostomus discolor (pale spear-nosed bat) ]

Gene ID: 114497988, updated on 30-Mar-2024

Summary

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Gene symbol
ARID1A
Gene description
AT-rich interaction domain 1A
See related
EnsemblRapid:ENSPDIG00005013957
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See ARID1A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
101 current mPhyDis1.pri.v3 (GCF_004126475.2) 5 NC_040907.2 (16895759..16963632)
100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 5 NC_040907.1 (54824613..54892955)

Chromosome 5 - NC_040907.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA38 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118500544 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene zinc finger DHHC-type palmitoyltransferase 18 Neighboring gene cytochrome c oxidase subunit 6B1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhyDis1.pri.v3

Genomic

  1. NC_040907.2 Reference mPhyDis1.pri.v3

    Range
    16895759..16963632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028514012.2 → XP_028369813.1  AT-rich interactive domain-containing protein 1A isoform X4

    UniProtKB/TrEMBL
    A0A6J2LVD5, A0A834EAU2
    Conserved Domains (5) summary
    TIGR01628
    Location:7 → 86
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PHA03247
    Location:131 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:330 → 564
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:635 → 727
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1588 → 1843
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  2. XM_028514011.2 → XP_028369812.1  AT-rich interactive domain-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0A6J2LPX0, A0A834EAU2
    Related
    ENSPDIP00005019883.1, ENSPDIT00005023001.2
    Conserved Domains (4) summary
    TIGR01628
    Location:7 → 86
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam12004
    Location:213 → 502
    DUF3498; Domain of unknown function (DUF3498)
    pfam12031
    Location:1589 → 1844
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
    cd16876
    Location:635 → 727
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  3. XM_028514009.2 → XP_028369810.1  AT-rich interactive domain-containing protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A6J2LV38, A0A834A2I9
    Conserved Domains (5) summary
    TIGR01628
    Location:370 → 467
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:596 → 775
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:711 → 945
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1016 → 1108
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1969 → 2224
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  4. XM_028514008.2 → XP_028369809.1  AT-rich interactive domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A6J2LS22, A0A834A2I9
    Related
    ENSPDIP00005019910.1, ENSPDIT00005023037.2
    Conserved Domains (5) summary
    TIGR01628
    Location:370 → 467
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:596 → 775
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:711 → 945
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1016 → 1108
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1970 → 2225
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
Nucleotide Protein
Heading Accession and Version

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