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CLDN1 claudin 1 [ Phyllostomus discolor (pale spear-nosed bat) ]

Gene ID: 114490538, updated on 30-Mar-2024

Summary

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Gene symbol
CLDN1
Gene description
claudin 1
See related
EnsemblRapid:ENSPDIG00005000069
Gene type
protein coding
RefSeq status
MODEL
Organism
Phyllostomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
Orthologs
human mouse all
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Genomic context

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See CLDN1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
101 current mPhyDis1.pri.v3 (GCF_004126475.2) 2 NC_040904.2 (49373626..49386684, complement)
100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 2 NC_040904.1 (45908159..45921015, complement)

Chromosome 2 - NC_040904.2Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene uncharacterized LOC118498837 Neighboring gene U6 spliceosomal RNA Neighboring gene claudin 16 Neighboring gene transmembrane protein 207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhyDis1.pri.v3

Genomic

  1. NC_040904.2 Reference mPhyDis1.pri.v3

    Range
    49373626..49386684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028504559.2 → XP_028360360.1  claudin-1

    UniProtKB/TrEMBL
    A0A6J2L3X2
    Related
    ENSPDIP00005000046.1, ENSPDIT00005000075.2
    Conserved Domains (1) summary
    pfam00822
    Location:5 → 182
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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