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LMAN2L lectin, mannose binding 2 like [ Physeter catodon (sperm whale) ]

Gene ID: 114483902, updated on 19-Jun-2024

Summary

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Gene symbol
LMAN2L
Gene description
lectin, mannose binding 2 like
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See LMAN2L in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 12 NC_041225.1 (15777897..15796867, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 12 NC_041225.1 (15777897..15796867, complement)

Chromosome 12 - NC_041225.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 3 Neighboring gene AT-rich interaction domain 5A Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041225.1 Reference ASM283717v5 Primary Assembly

    Range
    15777897..15796867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028496689.1 → XP_028352490.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A455BU23
    Conserved Domains (1) summary
    cl14058
    Location:50 → 169
    lectin_L-type; legume lectins

  2. XM_028496690.1 → XP_028352491.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A455C8M2
    Conserved Domains (1) summary
    cl14058
    Location:50 → 171
    lectin_L-type; legume lectins

  3. XM_028496688.2 → XP_028352489.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A455BU24
    Conserved Domains (1) summary
    cl14058
    Location:50 → 193
    lectin_L-type; legume lectins

RNA

  1. XR_003682264.1 RNA Sequence

  2. XR_003682263.1 RNA Sequence

  3. XR_003682265.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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