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LOC11445422 agmatine deiminase-like [ Medicago truncatula (barrel medic) ]

Gene ID: 11445422, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11445422
Gene description
agmatine deiminase-like
Locus tag
MtrunA17_Chr4g0061951
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
Also known as
AIH; MtAIH
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Genomic context

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See LOC11445422 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (53941616..53946727, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (45912107..45917166, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase 16 Neighboring gene agmatine deiminase-like Neighboring gene inorganic pyrophosphatase TTM1 Neighboring gene H/ACA ribonucleoprotein complex subunit 2-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables agmatine deiminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-arginine deiminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agmatine deiminase
Names
Agmatine iminohydrolase
EMB1873 protein
MtrunA17_Chr4g0061951
porphyromonas-type peptidyl-arginine deiminase
putative agmatine deiminase
XP_003609175.2
XP_024636109.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405049.1 → NP_001391978.1  agmatine deiminase

    Status: VALIDATED

    Source sequence(s)
    AL375344, AL375345, BF650482, CX520591, GT143600
    UniProtKB/Swiss-Prot
    A0A0C3X550, B7FI21, G7JT50, I3S1J5

  2. NM_001405050.1 → NP_001391979.1  agmatine deiminase

    Status: VALIDATED

    Source sequence(s)
    AL375344, AL375345, CX520591, EV255809, GT143600
    UniProtKB/Swiss-Prot
    A0A0C3X550, B7FI21, G7JT50, I3S1J5

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    53941616..53946727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024780341.2 → XP_024636109.1  agmatine deiminase

    Conserved Domains (1) summary
    PLN02690
    Location:5 → 374
    PLN02690; Agmatine deiminase

  2. XM_003609127.4 → XP_003609175.2  agmatine deiminase

    UniProtKB/TrEMBL
    G7JT50
    Conserved Domains (1) summary
    PLN02690
    Location:5 → 374
    PLN02690; Agmatine deiminase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G7JT50.2 GenPept UniProtKB/Swiss-Prot:G7JT50

Gene LinkOut

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