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LOC11441666 cellulose synthase-like protein D3 [ Medicago truncatula (barrel medic) ]

Gene ID: 11441666, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11441666
Gene description
cellulose synthase-like protein D3
Locus tag
MtrunA17_Chr4g0039801
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11441666 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (37892771..37898718, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (29916330..29922307, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene ATPase family AAA domain-containing protein 3C Neighboring gene 4-coumarate--CoA ligase-like 6 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene ABC transporter B family member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3
Names
putative 1,4-beta-D-xylan synthase transcription factor C2H2 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    37892771..37898718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024782129.2 → XP_024637897.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    G7JSR7
    Conserved Domains (1) summary
    PLN02248
    Location:24 → 1142
    PLN02248; cellulose synthase-like protein

  2. XM_003607379.4 → XP_003607427.1  cellulose synthase-like protein D3

    See identical proteins and their annotated locations for XP_003607427.1

    UniProtKB/TrEMBL
    G7JSR7
    Conserved Domains (1) summary
    PLN02248
    Location:24 → 1142
    PLN02248; cellulose synthase-like protein

  3. XM_024782128.2 → XP_024637896.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    G7JSR7
    Conserved Domains (1) summary
    PLN02248
    Location:24 → 1142
    PLN02248; cellulose synthase-like protein

  4. XM_024782131.2 → XP_024637899.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    G7JSR7
    Conserved Domains (1) summary
    PLN02248
    Location:24 → 1142
    PLN02248; cellulose synthase-like protein

  5. XM_024782130.2 → XP_024637898.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    G7JSR7
    Conserved Domains (1) summary
    PLN02248
    Location:24 → 1142
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
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