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LOC114415205 probable beta-1,4-xylosyltransferase IRX9H [ Glycine soja ]

Gene ID: 114415205, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114415205
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
D0Y65_014178
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114415205 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 6 NC_041007.1 (7186302..7190557)

Chromosome 6 - NC_041007.1Genomic Context describing neighboring genes Neighboring gene sucrose transport protein SUC4-like Neighboring gene protein DETOXIFICATION 48-like Neighboring gene uncharacterized LOC114415207 Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041007.1 Chromosome 6 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H
Names
putative beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041007.1 Reference ASM419377v2 Primary Assembly

    Range
    7186302..7190557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028379795.1 → XP_028235596.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A445K703
    Conserved Domains (1) summary
    cd00218
    Location:161 → 390
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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