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LOC114412653 probable starch synthase 4, chloroplastic/amyloplastic [ Glycine soja ]

Gene ID: 114412653, updated on 18-Sep-2024

Summary

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Gene symbol
LOC114412653
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Locus tag
D0Y65_012138
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114412653 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 5 NC_041006.1 (34064529..34081111)

Chromosome 5 - NC_041006.1Genomic Context describing neighboring genes Neighboring gene protein REDUCED WALL ACETYLATION 3-like Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene sm-like protein LSM5 Neighboring gene chlorophyll a-b binding protein 3, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041006.1 Chromosome 5 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic
Names
putative starch synthase 4, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041006.1 Reference ASM419377v2 Primary Assembly

    Range
    34064529..34081111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028376625.1 → XP_028232426.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A445KND6
    Conserved Domains (1) summary
    PLN02939
    Location:1 → 835
    PLN02939; transferase, transferring glycosyl groups

  2. XM_028376624.1 → XP_028232425.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A445KMQ6, A0A445KND6
    Conserved Domains (1) summary
    PLN02939
    Location:1 → 986
    PLN02939; transferase, transferring glycosyl groups
Nucleotide Protein
Heading Accession and Version

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