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LOC114411837 probable xyloglucan 6-xylosyltransferase 5 [ Glycine soja ]

Gene ID: 114411837, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114411837
Gene description
probable xyloglucan 6-xylosyltransferase 5
Locus tag
D0Y65_011078
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114411837 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 5 NC_041006.1 (2167174..2169149, complement)

Chromosome 5 - NC_041006.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At5g61350 Neighboring gene uncharacterized LOC114411839 Neighboring gene uncharacterized LOC114411838 Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial-like Neighboring gene two-component response regulator-like APRR1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041006.1 Chromosome 5 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5
Names
putative xyloglucan 6-xylosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041006.1 Reference ASM419377v2 Primary Assembly

    Range
    2167174..2169149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028375564.1 → XP_028231365.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A445KI85
    Conserved Domains (1) summary
    PLN03182
    Location:28 → 441
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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