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LOC114409812 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 [ Glycine soja ]

Gene ID: 114409812, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114409812
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8
Locus tag
D0Y65_010104
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114409812 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 4 NC_041005.1 (44162467..44169104, complement)

Chromosome 4 - NC_041005.1Genomic Context describing neighboring genes Neighboring gene stem-specific protein TSJT1-like Neighboring gene uncharacterized LOC114409813 Neighboring gene spermidine synthase 2-like Neighboring gene uncharacterized LOC114410856

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041005.1 Chromosome 4 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8; probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Names
putative alpha,alpha-trehalose-phosphate synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041005.1 Reference ASM419377v2 Primary Assembly

    Range
    44162467..44169104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028373434.1 → XP_028229235.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 isoform X1

    UniProtKB/TrEMBL
    A0A0B2RQB8, A0A445L1U0
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_028373435.1 → XP_028229236.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 isoform X2

    UniProtKB/TrEMBL
    A0A0B2RQB8, A0A445L1X4
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 812
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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