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LOC114407405 cellulose synthase-like protein D5 [ Glycine soja ]

Gene ID: 114407405, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114407405
Gene description
cellulose synthase-like protein D5
Locus tag
D0Y65_007859
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114407405 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 3 NC_041004.1 (43988449..43993098)

Chromosome 3 - NC_041004.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 3-like Neighboring gene syntaxin-43-like Neighboring gene probable galacturonosyltransferase-like 7 Neighboring gene uncharacterized LOC114405315

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041004.1 Chromosome 3 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041004.1 Reference ASM419377v2 Primary Assembly

    Range
    43988449..43993098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028370487.1 → XP_028226288.1  cellulose synthase-like protein D5

    UniProtKB/TrEMBL
    A0A0B2QGN1
    Conserved Domains (1) summary
    PLN02248
    Location:5 → 1151
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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