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LOC114401206 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Glycine soja ]

Gene ID: 114401206, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114401206
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Locus tag
D0Y65_054852
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114401206 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 20 NC_041021.1 (48643871..48653151, complement)

Chromosome 20 - NC_041021.1Genomic Context describing neighboring genes Neighboring gene germin-like protein subfamily 1 member 7 Neighboring gene germin-like protein subfamily 1 member 13 Neighboring gene uncharacterized LOC114403195 Neighboring gene GDSL esterase/lipase At5g33370-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041021.1 Chromosome 20 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Names
putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041021.1 Reference ASM419377v2 Primary Assembly

    Range
    48643871..48653151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028363670.1 → XP_028219471.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

    UniProtKB/TrEMBL
    A0A445F8S0, A0A445F8Y9
    Conserved Domains (4) summary
    TIGR02917
    Location:65 → 498
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:268 → 296
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:481 → 517
    TPR_11; TPR repeat
    cl10013
    Location:603 → 962
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases