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LOC114398944 probable beta-1,4-xylosyltransferase IRX9 [ Glycine soja ]

Gene ID: 114398944, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114398944
Gene description
probable beta-1,4-xylosyltransferase IRX9
Locus tag
D0Y65_051821
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114398944 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 19 NC_041020.1 (43734910..43737660, complement)

Chromosome 19 - NC_041020.1Genomic Context describing neighboring genes Neighboring gene interactor of constitutive active ROPs 2, chloroplastic-like Neighboring gene protein IQ-DOMAIN 1-like Neighboring gene pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like Neighboring gene DEAD-box ATP-dependent RNA helicase 57-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041020.1 Chromosome 19 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9
Names
putative beta-1,4-xylosyltransferase IRX9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041020.1 Reference ASM419377v2 Primary Assembly

    Range
    43734910..43737660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028361034.1 → XP_028216835.1  probable beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A445FHY5
    Conserved Domains (1) summary
    cl11394
    Location:1 → 340
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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