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LOC114387342 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Glycine soja ]

Gene ID: 114387342, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114387342
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Locus tag
D0Y65_041589
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114387342 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 15 NC_041016.1 (32830876..32865781)

Chromosome 15 - NC_041016.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene uncharacterized LOC114387027 Neighboring gene uncharacterized LOC114386071 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene uncharacterized LOC114386072

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041016.1 Chromosome 15 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Names
Alpha,alpha-trehalose-phosphate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041016.1 Reference ASM419377v2 Primary Assembly

    Range
    32830876..32865781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028347511.1 → XP_028203312.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  2. XM_028347513.1 → XP_028203314.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  3. XM_028347510.1 → XP_028203311.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  4. XM_028347509.1 → XP_028203310.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  5. XM_028347514.1 → XP_028203315.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  6. XM_028347515.1 → XP_028203316.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A0B2QF52, A0A445GWD4
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 911
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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