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LOC114380362 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Glycine soja ]

Gene ID: 114380362, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114380362
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Locus tag
D0Y65_035292
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine soja
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC114380362 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM419377v2 (GCF_004193775.1) 12 NC_041013.1 (43813703..43835789)

Chromosome 12 - NC_041013.1Genomic Context describing neighboring genes Neighboring gene B-box zinc finger protein 22-like Neighboring gene NADH kinase-like Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene bidirectional sugar transporter SWEET2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041013.1 Chromosome 12 Reference ASM419377v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Names
Alpha,alpha-trehalose-phosphate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM419377v2 Primary Assembly

Genomic

  1. NC_041013.1 Reference ASM419377v2 Primary Assembly

    Range
    43813703..43835789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028339369.1 → XP_028195170.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X3

    UniProtKB/TrEMBL
    A0A0B2QHS8
    Conserved Domains (1) summary
    PLN03064
    Location:9 → 889
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  2. XM_028339366.1 → XP_028195167.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A0B2QHS8
    Conserved Domains (1) summary
    PLN03064
    Location:9 → 909
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  3. XM_028339365.1 → XP_028195166.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A0B2QHS8
    Conserved Domains (1) summary
    PLN03064
    Location:9 → 909
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  4. XM_028339368.1 → XP_028195169.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X2

    UniProtKB/TrEMBL
    A0A0B2QHS8, A0A445HUD2
    Conserved Domains (1) summary
    PLN03064
    Location:9 → 908
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  5. XM_028339367.1 → XP_028195168.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A0B2QHS8
    Conserved Domains (1) summary
    PLN03064
    Location:9 → 909
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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