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LOC11436628 probable galacturonosyltransferase 3 [ Medicago truncatula (barrel medic) ]

Gene ID: 11436628, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11436628
Gene description
probable galacturonosyltransferase 3
Locus tag
MtrunA17_Chr3g0138381
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11436628 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (53314943..53319192)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (49859851..49864100)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 93 Neighboring gene F-box/FBD/LRR-repeat protein At4g00160 Neighboring gene protein TIFY 8 Neighboring gene histone acetyltransferase HAC12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 3
Names
polygalacturonate 4-alpha-galacturonosyltransferase
putative polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    53314943..53319192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003603414.4 → XP_003603462.2  probable galacturonosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A0C3VQR5, G7JBP7
    Conserved Domains (1) summary
    cl28622
    Location:50 → 663
    PLN02870; Probable galacturonosyltransferase

  2. XM_024779629.2 → XP_024635397.1  probable galacturonosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A072V2P8
    Conserved Domains (1) summary
    cl28622
    Location:2 → 586
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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