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LOC114333938 tRNA pseudouridine(38/39) synthase [ Diabrotica virgifera virgifera (western corn rootworm) ]

Gene ID: 114333938, updated on 6-Jun-2024

Summary

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Gene symbol
LOC114333938
Gene description
tRNA pseudouridine(38/39) synthase
See related
EnsemblRapid:LOC114333938
Gene type
protein coding
RefSeq status
MODEL
Organism
Diabrotica virgifera virgifera (sub-species: virgifera)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Galerucinae; Diabroticina; Diabroticites; Diabrotica
Orthologs
fruit fly all
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Genomic context

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See LOC114333938 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
101 current PGI_DIABVI_V3a (GCF_917563875.1) 1 NC_065443.1 (96393449..96452196)
100 previous assembly Dvir_v2.0 (GCF_003013835.1) Unplaced Scaffold NW_021039533.1 (62366..103116, complement)

Chromosome 1 - NC_065443.1Genomic Context describing neighboring genes Neighboring gene protein distal antenna Neighboring gene leukocyte receptor cluster member 8 homolog Neighboring gene ATP-dependent DNA helicase DDX11 Neighboring gene sedoheptulokinase-like Neighboring gene integrator complex subunit 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine(38/39) synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Diabrotica virgifera virgifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PGI_DIABVI_V3a

Genomic

  1. NC_065443.1 Reference PGI_DIABVI_V3a

    Range
    96393449..96452196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028283941.2 → XP_028139742.2  tRNA pseudouridine(38/39) synthase

    UniProtKB/TrEMBL
    A0A6P7FY38
    Related
    XP_028139742.2, XM_028283941.2
Nucleotide Protein
Heading Accession and Version

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