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LOC114324912 alkylated DNA repair protein alkB homolog 8 [ Diabrotica virgifera virgifera (western corn rootworm) ]

Gene ID: 114324912, updated on 10-Oct-2024

Summary

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Gene symbol
LOC114324912
Gene description
alkylated DNA repair protein alkB homolog 8
See related
EnsemblRapid:LOC114324912
Gene type
protein coding
RefSeq status
MODEL
Organism
Diabrotica virgifera virgifera (sub-species: virgifera)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Galerucinae; Diabroticina; Diabroticites; Diabrotica
Orthologs
fruit fly all
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Genomic context

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See LOC114324912 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
101 current PGI_DIABVI_V3a (GCF_917563875.1) 9 NC_065451.1 (1313613..1415869)
100 previous assembly Dvir_v2.0 (GCF_003013835.1) Unplaced Scaffold NW_021038633.1 (1224804..1335520)

Chromosome 9 - NC_065451.1Genomic Context describing neighboring genes Neighboring gene THO complex subunit 2-like protein Neighboring gene liprin-beta-1 Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene uncharacterized LOC126892936 Neighboring gene Ubiquinol-cytochrome c reductase ubiquinone-binding protein Neighboring gene DNA polymerase gamma, catalytic subunit tam

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi to plasma membrane transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8; guanine nucleotide exchange factor for Rab-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Diabrotica virgifera virgifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PGI_DIABVI_V3a

Genomic

  1. NC_065451.1 Reference PGI_DIABVI_V3a

    Range
    1313613..1415869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028272832.2 → XP_028128633.2  alkylated DNA repair protein alkB homolog 8 isoform X3

    Related
    XP_028128633.2, XM_028272832.2

  2. XM_028272828.2 → XP_028128629.2  alkylated DNA repair protein alkB homolog 8 isoform X1

    Related
    XP_028128629.2, XM_028272828.2

  3. XM_028272831.2 → XP_028128632.1  guanine nucleotide exchange factor for Rab-3A isoform X2

    UniProtKB/TrEMBL
    A0A6P7F035
    Related
    XP_028128632.1, XM_028272831.2
    Conserved Domains (1) summary
    pfam06428
    Location:187 → 240
    Sec2p; GDP/GTP exchange factor Sec2p

  4. XM_028272830.2 → XP_028128631.1  guanine nucleotide exchange factor for Rab-3A isoform X2

    UniProtKB/TrEMBL
    A0A6P7F035
    Related
    XP_028128631.1, XM_028272830.2
    Conserved Domains (1) summary
    pfam06428
    Location:187 → 240
    Sec2p; GDP/GTP exchange factor Sec2p
Nucleotide Protein
Heading Accession and Version

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