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LOC11431731 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Medicago truncatula (barrel medic) ]

Gene ID: 11431731, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11431731
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Locus tag
MtrunA17_Chr1g0189851
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11431731 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
29
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (39204249..39215696, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (35323701..35335118, complement)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein 48 kDa protein Neighboring gene germin-like protein subfamily 1 member 16 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At5g63930 Neighboring gene uncharacterized LOC25484618

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Names
peptide-N-acetylglucosaminyltransferase
putative protein O-GlcNAc transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    39204249..39215696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003590857.4 → XP_003590905.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

    See identical proteins and their annotated locations for XP_003590905.1

    UniProtKB/TrEMBL
    G7I5N5
    Conserved Domains (10) summary
    smart00028
    Location:405 → 433
    TPR; Tetratricopeptide repeats
    COG0457
    Location:129 → 388
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:266 → 294
    TPR; TPR repeat [structural motif]
    cd15832
    Location:179 → 244
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:266 → 299
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:405 → 467
    TPR_11; TPR repeat
    pfam13424
    Location:92 → 162
    TPR_12; Tetratricopeptide repeat
    pfam13432
    Location:442 → 500
    TPR_16; Tetratricopeptide repeat
    cl10013
    Location:601 → 961
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:176 → 383
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_024781751.2 → XP_024637519.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X3

    UniProtKB/TrEMBL
    A0A396JTH9
    Conserved Domains (3) summary
    sd00006
    Location:24 → 52
    TPR; TPR repeat [structural motif]
    cl10013
    Location:359 → 718
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl26002
    Location:1 → 264
    TPR_11; TPR repeat

  3. XM_024781748.2 → XP_024637516.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:52 → 80
    TPR; TPR repeat [structural motif]
    cl10013
    Location:387 → 746
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl26002
    Location:10 → 292
    TPR_11; TPR repeat
Nucleotide Protein
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