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LOC114315843 callose synthase 12-like [ Camellia sinensis ]

Gene ID: 114315843, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114315843
Gene description
callose synthase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114315843 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025063.1 (181642..196811)

NW_021025063.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 33-like Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC114315806 Neighboring gene uncharacterized LOC114315807

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025063 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025063.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    181642..196811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028262449.1 → XP_028118250.1  callose synthase 12-like isoform X2

    UniProtKB/TrEMBL
    A0A4S4D4Q4
    Conserved Domains (2) summary
    pfam02364
    Location:883 → 1648
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:167 → 280
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_028262448.1 → XP_028118249.1  callose synthase 12-like isoform X1

    UniProtKB/TrEMBL
    A0A4S4D4Q4
    Conserved Domains (2) summary
    pfam02364
    Location:882 → 1647
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:166 → 279
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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