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LOC114314979 polygalacturonate 4-alpha-galacturonosyltransferase-like [ Camellia sinensis ]

Gene ID: 114314979, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114314979
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114314979 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025039.1 (1327922..1355770)

NW_021025039.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL6 Neighboring gene histone deacetylase complex subunit SAP18-like Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3-like Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025039 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025039.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    1327922..1355770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028261551.1 → XP_028117352.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1

    UniProtKB/TrEMBL
    A0A7J7HLW0
    Conserved Domains (1) summary
    PLN02910
    Location:132 → 731
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_028261550.1 → XP_028117351.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1

    UniProtKB/TrEMBL
    A0A7J7HLW0
    Conserved Domains (1) summary
    PLN02910
    Location:132 → 731
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  3. XM_028261552.1 → XP_028117353.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X2

    UniProtKB/TrEMBL
    A0A7J7HLW0
    Conserved Domains (1) summary
    PLN02910
    Location:132 → 727
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  4. XM_028261553.1 → XP_028117354.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X3

    UniProtKB/TrEMBL
    A0A7J7HLW0
    Conserved Domains (1) summary
    PLN02910
    Location:83 → 682
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
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