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LOC114314102 callose synthase 10 [ Camellia sinensis ]

Gene ID: 114314102, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114314102
Gene description
callose synthase 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114314102 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
51
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025006.1 (53201..134488)

NW_021025006.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114314103 Neighboring gene uncharacterized LOC114314092 Neighboring gene uncharacterized LOC114314097

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025006 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome and metabolite analysis identifies nitrogen utilization genes in tea plant (Camellia sinensis). Li W, et al. Sci Rep, 2017 May 10. PMID 28490757, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025006.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    53201..134488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028260545.1 → XP_028116346.1  callose synthase 10 isoform X1

    Conserved Domains (2) summary
    pfam02364
    Location:1030 → 1769
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:350 → 460
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_028260546.1 → XP_028116347.1  callose synthase 10 isoform X2

    Conserved Domains (2) summary
    pfam02364
    Location:1025 → 1764
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:345 → 455
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_028260547.1 → XP_028116348.1  callose synthase 10 isoform X3

    Conserved Domains (2) summary
    pfam02364
    Location:1029 → 1768
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:349 → 459
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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