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LOC11430678 probable dynein light chain [ Medicago truncatula (barrel medic) ]

Gene ID: 11430678, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11430678
Gene description
probable dynein light chain
Locus tag
MtrunA17_Chr2g0331651
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11430678 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (49932073..49933020, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (43818213..43819114, complement)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 12 Neighboring gene glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR Neighboring gene uncharacterized LOC11434769 Neighboring gene protein disulfide isomerase-like 1-6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable dynein light chain
Names
cytoplasmic dynein light chain
putative dynein ATPase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    49932073..49933020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003597700.4 → XP_003597748.1  probable dynein light chain

    See identical proteins and their annotated locations for XP_003597748.1

    UniProtKB/TrEMBL
    G7II18
    Conserved Domains (1) summary
    pfam01221
    Location:5 → 89
    Dynein_light; Dynein light chain type 1
Nucleotide Protein
Heading Accession and Version

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