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LOC114299904 hydroxyproline O-galactosyltransferase HPGT1-like [ Camellia sinensis ]

Gene ID: 114299904, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114299904
Gene description
hydroxyproline O-galactosyltransferase HPGT1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114299904 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021029122.1 (242295..248772)

NW_021029122.1Genomic Context describing neighboring genes Neighboring gene ABC transporter C family member 10-like Neighboring gene ABC transporter C family member 10-like Neighboring gene probable inactive receptor kinase At4g23740

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021029122 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021029122.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    242295..248772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028244733.1 → XP_028100534.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X2

    Conserved Domains (2) summary
    PLN03193
    Location:80 → 275
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:17 → 95
    DUF4094; Domain of unknown function (DUF4094)

  2. XM_028244731.1 → XP_028100532.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X1

    Conserved Domains (2) summary
    PLN03193
    Location:80 → 341
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:17 → 95
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
Heading Accession and Version

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