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LOC114293542 polygalacturonate 4-alpha-galacturonosyltransferase-like [ Camellia sinensis ]

Gene ID: 114293542, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114293542
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114293542 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027747.1 (955759..965030, complement)

NW_021027747.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 91-like Neighboring gene uncharacterized calcium-binding protein At1g02270-like Neighboring gene uncharacterized LOC114293547 Neighboring gene ankyrin repeat-containing protein At5g02620-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027747 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027747.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    955759..965030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028237624.1 → XP_028093425.1  polygalacturonate 4-alpha-galacturonosyltransferase-like

    Conserved Domains (3) summary
    PLN02829
    Location:1 → 364
    PLN02829; Probable galacturonosyltransferase
    COG0359
    Location:461 → 540
    RplI; Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
    pfam03004
    Location:362 → 469
    Transposase_24; Plant transposase (Ptta/En/Spm family)
Nucleotide Protein
Heading Accession and Version

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