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LOC114291570 probable UDP-arabinopyranose mutase 5 [ Camellia sinensis ]

Gene ID: 114291570, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114291570
Gene description
probable UDP-arabinopyranose mutase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114291570 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027490.1 (258142..265557)

NW_021027490.1Genomic Context describing neighboring genes Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2-like Neighboring gene protein LUTEIN DEFICIENT 5, chloroplastic Neighboring gene midasin-like Neighboring gene uncharacterized LOC114291569

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027490 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027490.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    258142..265557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028235419.1 → XP_028091220.1  probable UDP-arabinopyranose mutase 5 isoform X2

    UniProtKB/TrEMBL
    A0A7J7H7K8
    Conserved Domains (1) summary
    pfam03214
    Location:84 → 423
    RGP; Reversibly glycosylated polypeptide

  2. XM_028235416.1 → XP_028091217.1  probable UDP-arabinopyranose mutase 5 isoform X1

    UniProtKB/TrEMBL
    A0A7J7H7K8
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 345
    RGP; Reversibly glycosylated polypeptide

  3. XM_028235415.1 → XP_028091216.1  probable UDP-arabinopyranose mutase 5 isoform X1

    UniProtKB/TrEMBL
    A0A7J7H7K8
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 345
    RGP; Reversibly glycosylated polypeptide

  4. XM_028235418.1 → XP_028091219.1  probable UDP-arabinopyranose mutase 5 isoform X1

    UniProtKB/TrEMBL
    A0A7J7H7K8
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 345
    RGP; Reversibly glycosylated polypeptide

  5. XM_028235417.1 → XP_028091218.1  probable UDP-arabinopyranose mutase 5 isoform X1

    UniProtKB/TrEMBL
    A0A7J7H7K8
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 345
    RGP; Reversibly glycosylated polypeptide
Nucleotide Protein
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