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LOC114290749 probable beta-1,4-xylosyltransferase IRX14 [ Camellia sinensis ]

Gene ID: 114290749, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114290749
Gene description
probable beta-1,4-xylosyltransferase IRX14
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114290749 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027456.1 (109031..114383)

NW_021027456.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114290754 Neighboring gene uncharacterized LOC114290747 Neighboring gene cysteine proteinase RD21A-like Neighboring gene uncharacterized LOC114290759

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027456 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027456.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    109031..114383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028234707.1 → XP_028090508.1  probable beta-1,4-xylosyltransferase IRX14

    UniProtKB/TrEMBL
    A0A7J7I8L3
    Conserved Domains (1) summary
    pfam03360
    Location:180 → 421
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein
Heading Accession and Version

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