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LOC114286702 hydroxyproline O-galactosyltransferase GALT6-like [ Camellia sinensis ]

Gene ID: 114286702, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114286702
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114286702 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027094.1 (2481716..2486390, complement)

NW_021027094.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114286699 Neighboring gene HIPL1 protein-like Neighboring gene uncharacterized LOC114286704 Neighboring gene uncharacterized LOC114286748 Neighboring gene uncharacterized LOC114286749

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027094 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027094.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    2481716..2486390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028229905.1 → XP_028085706.1  hydroxyproline O-galactosyltransferase GALT6-like isoform X1

    UniProtKB/TrEMBL
    A0A4S4DUQ2
    Conserved Domains (1) summary
    PLN03133
    Location:147 → 654
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_028229906.1 → XP_028085707.1  hydroxyproline O-galactosyltransferase GALT6-like isoform X2

    UniProtKB/TrEMBL
    A0A4S4DUQ2
    Conserved Domains (1) summary
    PLN03133
    Location:147 → 618
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  3. XM_028229907.1 → XP_028085708.1  hydroxyproline O-galactosyltransferase GALT6-like isoform X3

    UniProtKB/TrEMBL
    A0A4S4DUQ2
    Conserved Domains (1) summary
    PLN03133
    Location:147 → 549
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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