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LOC114286627 callose synthase 3 [ Camellia sinensis ]

Gene ID: 114286627, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114286627
Gene description
callose synthase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114286627 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027091.1 (790547..817671, complement)

NW_021027091.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene uncharacterized LOC114286605 Neighboring gene zinc finger CCCH domain-containing protein 40-like Neighboring gene zinc finger CCCH domain-containing protein 14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027091 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027091.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    790547..817671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028229802.1 → XP_028085603.1  callose synthase 3

    UniProtKB/TrEMBL
    A0A4S4DUQ5
    Conserved Domains (3) summary
    pfam02364
    Location:1053 → 1816
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:52 → 177
    Vta1; Vta1 like
    pfam14288
    Location:323 → 436
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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