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LOC114285603 probable xyloglucan 6-xylosyltransferase 5 [ Camellia sinensis ]

Gene ID: 114285603, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114285603
Gene description
probable xyloglucan 6-xylosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114285603 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021027021.1 (783106..785006)

NW_021027021.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like APRR1 Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial Neighboring gene LON peptidase N-terminal domain and RING finger protein 1 Neighboring gene uncharacterized LOC114285629

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021027021 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Effect of fluoride treatment on gene expression in tea plant (Camellia sinensis). Li QS, et al. Sci Rep, 2017 Aug 29. PMID 28851890, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021027021.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    783106..785006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028228653.1 → XP_028084454.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A4S4DVY0, A0A7J7I0M8
    Conserved Domains (1) summary
    PLN03182
    Location:33 → 446
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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