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LOC114281529 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like [ Camellia sinensis ]

Gene ID: 114281529, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114281529
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114281529 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021026720.1 (126582..133472)

NW_021026720.1Genomic Context describing neighboring genes Neighboring gene protein SAMBA-like Neighboring gene heat shock factor protein HSF8-like Neighboring gene RNA-binding protein 34-like Neighboring gene uncharacterized membrane protein At4g09580-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021026720 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like
Names
alpha,alpha-trehalose-phosphate synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021026720.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    126582..133472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028224028.1 → XP_028079829.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like

    UniProtKB/TrEMBL
    A0A4S4E1D8, A0A7J7GD81
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 848
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_028224030.1 → XP_028079831.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like

    UniProtKB/TrEMBL
    A0A4S4E1D8, A0A7J7GD81
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 848
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_028224029.1 → XP_028079830.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like

    UniProtKB/TrEMBL
    A0A4S4E1D8, A0A7J7GD81
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 848
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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