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LOC114276359 rhamnogalacturonan I rhamnosyltransferase 1-like [ Camellia sinensis ]

Gene ID: 114276359, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114276359
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114276359 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021026348.1 (826426..830542, complement)

NW_021026348.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-regulated receptor-like kinase 2 Neighboring gene phosphatidylinositol 4-kinase gamma 7-like Neighboring gene transcription factor BIM3-like Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP3 Neighboring gene auxin transport protein BIG-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021026348 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021026348.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    826426..830542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028218154.1 → XP_028073955.1  rhamnogalacturonan I rhamnosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A4V3WNH7, A0A7J7I0M1
    Conserved Domains (1) summary
    cd11299
    Location:111 → 436
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

  2. XM_028218155.1 → XP_028073956.1  rhamnogalacturonan I rhamnosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A7J7I0M1
    Conserved Domains (1) summary
    cd11299
    Location:93 → 418
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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