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LOC11425448 callose synthase 3-like [ Medicago truncatula (barrel medic) ]

Gene ID: 11425448, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11425448
Gene description
callose synthase 3-like
Locus tag
MtrunA17_Chr1g0213421
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11425448 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (56299967..56324314)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (52595653..52619996)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 12, chloroplastic Neighboring gene uncharacterized LOC11418639 Neighboring gene peroxisome biogenesis protein 12 Neighboring gene uncharacterized LOC112418694

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3-like
Names
putative 1,3-beta-glucan synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    56299967..56324314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024773185.2 → XP_024628953.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A0C3UVD0, A0A396K4U1, G7IAY2
    Conserved Domains (3) summary
    pfam02364
    Location:1056 → 1809
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:53 → 180
    Vta1; Vta1 like
    pfam14288
    Location:324 → 437
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_039830075.1 → XP_039686009.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A0C3UVD0, A0A396K4U1, G7IAY2
Nucleotide Protein
Heading Accession and Version

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