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LOC114248543 delta-sarcoglycan-like [ Bombyx mandarina (wild silkworm) ]

Gene ID: 114248543, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114248543
Gene description
delta-sarcoglycan-like
See related
EnsemblRapid:LOC114248543
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mandarina
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
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Genomic context

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See LOC114248543 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM398793v1 (GCF_003987935.1) Unplaced Scaffold NW_021011580.1 (387151..394131)

NW_021011580.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114248502 Neighboring gene delta-sarcoglycan-like Neighboring gene ER membrane protein complex subunit 10 Neighboring gene putative ATP-dependent RNA helicase Dbp80

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021011580 Unplaced Scaffold Reference ASM398793v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombyx mandarina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM398793v1 Primary Assembly

Genomic

  1. NW_021011580.1 Reference ASM398793v1 Primary Assembly

    Range
    387151..394131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028181809.1 → XP_028037610.1  delta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A6J2K5Q0
    Related
    XP_028037610.1, XM_028181809.1
    Conserved Domains (1) summary
    pfam04790
    Location:44 → 298
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_028181808.1 → XP_028037609.1  delta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A6J2K5Q0
    Related
    XP_028037609.1, XM_028181808.1
    Conserved Domains (1) summary
    pfam04790
    Location:44 → 298
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_028181810.1 → XP_028037611.1  delta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A6J2K5Q0
    Related
    XP_028037611.1, XM_028181810.1
    Conserved Domains (1) summary
    pfam04790
    Location:44 → 298
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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