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NCAN neurocan [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114226642, updated on 15-Mar-2024

Summary

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Gene symbol
NCAN
Gene description
neurocan
See related
EnsemblRapid:ENSEJUG00000024345
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
Orthologs
human mouse all
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Genomic context

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See NCAN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998748.1 (2375159..2394746, complement)

NW_020998748.1Genomic Context describing neighboring genes Neighboring gene transmembrane 6 superfamily member 2 Neighboring gene hyaluronan and proteoglycan link protein 4 Neighboring gene nuclear receptor 2C2 associated protein Neighboring gene regulatory factor X associated ankyrin containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020998748 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurocan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998748.1 Reference ASM402803v1 Primary Assembly

    Range
    2375159..2394746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028126815.1 → XP_027982616.1  neurocan core protein

    Related
    ENSEJUP00000033147.1, ENSEJUT00000036690.1
    Conserved Domains (8) summary
    cd00033
    Location:1246 → 1302
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA03247
    Location:512 → 1052
    PHA03247; large tegument protein UL36; Provisional
    cd00054
    Location:1077 → 1113
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:164 → 258
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:265 → 360
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:1043 → 1073
    EGF; EGF-like domain
    cl02432
    Location:1119 → 1242
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:55 → 165
    Ig; Immunoglobulin domain
Nucleotide Protein
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